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computing:batch:jobscriptexample

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computing:batch:jobscriptexample [2016/08/08 18:11] – iwncomputing:batch:jobscriptexample [2017/06/07 20:59] (current) – iwn
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 +Two examples of submission scripts to PSI's T3 batch system.
 +
 +
  ===== Example 1 =====  ===== Example 1 =====
  
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 <file text submitExample2.sh> <file text submitExample2.sh>
  
-#!/bin/bash+#! /bin/bash
 # https://wiki.chipp.ch/twiki/bin/view/CmsTier3/HowToSubmitJobs # https://wiki.chipp.ch/twiki/bin/view/CmsTier3/HowToSubmitJobs
 # run with qsub -q all.q submitAnalysis.sh # run with qsub -q all.q submitAnalysis.sh
  
-printf "######################################################\n" +printf "###################################################\n" 
-printf "##   Run Analysis with input %.20s   ##\n" $1 +printf "##   Run Analysis with input %-20s##\n" $1 
-printf "######################################################\n"+printf "###################################################\n"
  
 DBG=2 # debugging level DBG=2 # debugging level
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 OUTFILES="*.png" OUTFILES="*.png"
 TOPWORKDIR=/scratch/`whoami` TOPWORKDIR=/scratch/`whoami`
-JOBDIR=$INPUT 
 JOBDIR="analysis/$1" JOBDIR="analysis/$1"
 BASEDIR="/shome/myusername/CMSSW_5_3_24/src/myAnalysisFolder" BASEDIR="/shome/myusername/CMSSW_5_3_24/src/myAnalysisFolder"
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 SEUSERSUBDIR="analysis/$1" SEUSERSUBDIR="analysis/$1"
 SEOUTFILES="*.root" SEOUTFILES="*.root"
-HN_NAME=`whoami` +USER_SE_HOME="root://t3dcachedb.psi.ch:1094/pnfs/psi.ch/cms/trivcat/store/user/$USER" 
-USER_SRM_HOME="root://t3dcachedb.psi.ch:1094/pnfs/psi.ch/cms/trivcat/store/user" +SERESULTDIR=$USER_SE_HOME/$SEUSERSUBDIR
-# USER_SRM_HOME="srm://t3se01.psi.ch:8443/srm/managerv2?SFN=/pnfs/psi.ch/cms/trivcat/store/user" +
-SERESULTDIR=$USER_SRM_HOME/$HN_NAME/$SEUSERSUBDIR+
  
  
  
 ##### MONITORING/DEBUG INFORMATION ######################################## ##### MONITORING/DEBUG INFORMATION ########################################
 +
 +# write job report (stdout of this script)
 +mkdir -p /shome/myusername/CMSSW_5_3_24/src/myAnalysisFolder/analysis
 +#$ -o /shome/myusername/CMSSW_5_3_24/src/myAnalysisFolder/analysis
 +#$ -e /shome/myusername/CMSSW_5_3_24/src/myAnalysisFolder/analysis
  
 DATE_START=`date +%s` DATE_START=`date +%s`
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     done     done
 fi fi
 +
  
 # copy large files to $SERESULTDIR # copy large files to $SERESULTDIR
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         srmdebug="-v"         srmdebug="-v"
     fi     fi
-    echo "here1" >> myout.txt 
     for n in $SEOUTFILES; do     for n in $SEOUTFILES; do
-        echo "here2" >> myout.txt 
         if test ! -e $WORKDIR/$n; then         if test ! -e $WORKDIR/$n; then
             echo "WARNING: Cannot find output file $WORKDIR/$n. Ignoring it" >&2             echo "WARNING: Cannot find output file $WORKDIR/$n. Ignoring it" >&2
         else         else
             echo "xrdcp -f $WORKDIR/$n $SERESULTDIR/$n" >&2             echo "xrdcp -f $WORKDIR/$n $SERESULTDIR/$n" >&2
-            xrdcp -f $WORKDIR/$n $SERESULTDIR/$n +            xrdcp $srmdebug -d $DBG -f $WORKDIR/$n $SERESULTDIR/$n
-#             lcg-cp $srmdebug -b -D srmv2 $WORKDIR/$n $SERESULTDIR/$n+
             if test $? -ne 0; then             if test $? -ne 0; then
                 echo "ERROR: Failed to copy $WORKDIR/$n to $SERESULTDIR/$n" >&2                 echo "ERROR: Failed to copy $WORKDIR/$n to $SERESULTDIR/$n" >&2
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 </file> </file>
- 
computing/batch/jobscriptexample.txt · Last modified: 2017/06/07 20:59 by iwn

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