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computing:batch:jobscriptexample [2016/08/08 18:11] – iwn | computing:batch:jobscriptexample [2016/09/16 01:39] – [Example 2] iwn | ||
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# run with qsub -q all.q submitAnalysis.sh | # run with qsub -q all.q submitAnalysis.sh | ||
- | printf "###################################################### | + | printf "################################################### |
- | printf "## | + | printf "## |
- | printf "###################################################### | + | printf "################################################### |
DBG=2 # debugging level | DBG=2 # debugging level | ||
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OUTFILES=" | OUTFILES=" | ||
TOPWORKDIR=/ | TOPWORKDIR=/ | ||
- | JOBDIR=$INPUT | ||
JOBDIR=" | JOBDIR=" | ||
BASEDIR="/ | BASEDIR="/ | ||
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HN_NAME=`whoami` | HN_NAME=`whoami` | ||
USER_SRM_HOME=" | USER_SRM_HOME=" | ||
- | # USER_SRM_HOME=" | ||
SERESULTDIR=$USER_SRM_HOME/ | SERESULTDIR=$USER_SRM_HOME/ | ||
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##### MONITORING/ | ##### MONITORING/ | ||
+ | |||
+ | # write job report (stdout of this script) | ||
+ | mkdir -p / | ||
+ | #$ -o / | ||
+ | #$ -e / | ||
DATE_START=`date +%s` | DATE_START=`date +%s` | ||
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done | done | ||
fi | fi | ||
+ | |||
# copy large files to $SERESULTDIR | # copy large files to $SERESULTDIR | ||
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srmdebug=" | srmdebug=" | ||
fi | fi | ||
- | echo " | ||
for n in $SEOUTFILES; | for n in $SEOUTFILES; | ||
- | echo " | ||
if test ! -e $WORKDIR/ | if test ! -e $WORKDIR/ | ||
echo " | echo " | ||
else | else | ||
echo "xrdcp -f $WORKDIR/$n $SERESULTDIR/ | echo "xrdcp -f $WORKDIR/$n $SERESULTDIR/ | ||
- | xrdcp -f $WORKDIR/$n $SERESULTDIR/ | + | xrdcp $srmdebug |
- | # lcg-cp $srmdebug | + | |
if test $? -ne 0; then | if test $? -ne 0; then | ||
echo " | echo " | ||
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</ | </ | ||
- |